3-2. Run
M: Mandatory field
Run Metadata
1
File type
M
This has drop-down menus that allow you to select from a controlled vocabulary. See the File type from for details
2
File name
M
Exact file name including the extension.
Note: Use a semicolon (;) as a separator between paired-end read files (R1, R2), and a comma (,) as a separator between multiple files, such as for multi-lane or replicate data Example: Kdata_S1_L001_R1.fastq.gz;Kdata_S1_L001_R2.fastq.gz,Kdata_S2_L002_R1.fastq.gz;Kdata_S2_L002_R2.fastq.gz
3
MD5 Checksum
M
MD5 (Message Digest Algorithm 5) Checksum value of the each file. To obtain the MD5 checksum in Linux, enter the following command: md5sum [filename]
File type
1
fastq
Sequencing file containing nucleotide sequences and the associated quality scores
2
bam
PacBio/IonTorrent binary format file
3
sff
LS454 binary format file
4
hdf5
hdf5 PacBio binary format file for large sequencing data
5
fast5
Oxford Nanopore hdf5-based format file
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